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Research Scientist / Engineer, Two-Photon Imaging & Holographic Optogenetics

180k – 230kEmeryville, CAOtherOnsite
Summary

Leads development of miniaturized two-photon microscopes for cellular-resolution imaging and holographic optogenetics in rodents. Requires PhD, hands-on surgery experience, two-photon systems expertise, and neural data analysis skills in Python/MATLAB.

About the role

Responsibilities

  • Perform stereotaxic rodent surgeries: AAV viral vector delivery, chronic cranial window implantation, and GRIN lens or miniscope head-mount installation in mice and rats.
  • Design, build, and iterate on a miniaturized two-photon microscope incorporating spatial light modulators for holographic photostimulation.
  • Develop and optimize two-photon optogenetics protocols for single-cell and ensemble-level activation with minimal off-target excitation.
  • Lead computational analysis of large-scale neural population data, including dimensionality reduction, population decoding, generalized linear models, and circuit-level inference.
  • Collaborate with optical engineers, software developers, and neuroscientists to integrate hardware, software, and biology into a coherent experimental platform.
  • Contribute to publications and internal technical documentation.

Requirements

  • PhD in neuroscience, bioengineering, physics, or a related field, or equivalent demonstrated expertise.
  • Hands-on rodent surgery experience: stereotaxic injection, cranial window preparation, and secure implant fixation in mice and/or rats.
  • Practical experience with two-photon imaging systems, including optical alignment, system characterization, and in vivo use.
  • Proficiency in scientific computing for neural data analysis: Python and/or MATLAB, with familiarity with Suite2p, CaImAn, or comparable pipelines.
  • Strong foundational understanding of nonlinear optics, ultrafast laser physics, and fluorescence microscopy.

Nice-to-Haves

  • Direct experience with two-photon optogenetics (SLM-based holography, temporal focusing, or spiral scanning photostimulation).
  • Custom optical engineering with ultrafast pulsed lasers (Ti:Sapphire, fiber).
  • Miniaturized imaging systems.
  • Rat-scale stereotaxic surgery and freely moving behavioral paradigms.
  • Machine learning applied to neural data.
Skills
Two-Photon ImagingSpatial Light ModulatorsOptogeneticsPythonMATLABSuite2pCaImAnNonlinear OpticsUltrafast LasersTi:SapphireStereotaxic SurgeryHolographic PhotostimulationMachine Learning
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